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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4139607_4140917_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4139607 - 4140917
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ACTTCTGTGACA
Flanking Amino Acid:
YPFDLENIIFRMVDVGGQRS
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.7
42.4
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
30.5
-2.2
3.3
38.8
46.5
Minor BPS
54.6
0.14
2
67.9
39

Associated Gene:

Gene:
GNA11
Ensembl Gene ID:
ENSAPLG00000004066
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004190
4136715 - 4143706
6992