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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4143573_4143613_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4143573 - 4143613
Intron Length:
41

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTATTAAT
5'SS Class:
major
3'SS Sequence:
AGGCACTGGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CGTTCTGTAGGC
Flanking Amino Acid:
TLGCQTLLETSGKSTFIKQM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
72.3
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
40.9
-0.5
1.7
34.6
40.3
Minor 5ss
34.3
-1.8
2.7
45.3
42.3
Minor BPS
42.4
-0.6
2.3
54.17
44.3

Associated Gene:

Gene:
GNA11
Ensembl Gene ID:
ENSAPLG00000004066
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004190
4136715 - 4143706
6992