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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4179296_4179964_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4179296 - 4179964
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTT
Flanking Amino Acid:
EFQFLQNQYHSLKLECEKLA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
62.4
0.47
1.6
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023429
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030005
4176132 - 4184027
7896
Gene:
Ensembl Gene ID:
ENSAPLG00000028560
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035893
4175449 - 4180933
5485