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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4221718_4221812_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4221718 - 4221812
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CTGGCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
ACGGCCCCGACG
Flanking Amino Acid:
ESPKKDLFDMRPFEDALKLH
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
57.8
42.7
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
68.4
0.42
0.9
61.8
34.9
Minor 5ss
45.5
-0.5
2.8
55.5
43.2
Minor BPS
41.4
-0.8
1.9
41.53
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022748
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031238
4219546 - 4223971
4426
ENSAPLT00000030659
4219546 - 4223971
4426
ENSAPLT00000021613
4219546 - 4223971
4426
ENSAPLT00000045275
4219546 - 4223971
4426