About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4221975_4222097_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4221975 - 4222097
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTACT
5'SS Class:
major
3'SS Sequence:
CCGGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CCTGCTCCACCC
Flanking Amino Acid:
LGPPWDLESQGQPCDGYLQA
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
71.4
40.3
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
65
0.34
0.9
57.7
33.3
Minor 5ss
31.1
-2.2
3
34.5
41.3
Minor BPS
39.2
-0.8
2
46.2
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022748
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031238
4219546 - 4223971
4426
ENSAPLT00000030659
4219546 - 4223971
4426
ENSAPLT00000021613
4219546 - 4223971
4426
ENSAPLT00000045275
4219546 - 4223971
4426