About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4222427_4222547_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4222427 - 4222547
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTG
5'SS Class:
strong_major
3'SS Sequence:
ACGTCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TGTCCCCAAGCC
Flanking Amino Acid:
SPPKVVVPPDRVLGMEESAW
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.4
42.5
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
68
0.41
1
61.7
39.3
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
45.2
-0.3
2.2
61.78
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022748
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031238
4219546 - 4223971
4426
ENSAPLT00000030659
4219546 - 4223971
4426
ENSAPLT00000021613
4219546 - 4223971
4426
ENSAPLT00000045275
4219546 - 4223971
4426