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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4223113_4223236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4223113 - 4223236
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCGTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
CCCCCAGTAACC
Flanking Amino Acid:
LNLMIPTTRQIIANHHMQSI
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
61.5
0.26
0.9
52.8
36.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
44.2
-0.4
2.2
52.51
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022748
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031238
4219546 - 4223971
4426
ENSAPLT00000021613
4219546 - 4223971
4426