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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4233173_4233668_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4233173 - 4233668
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CCCTTTTCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATGGTTTTAACT
Flanking Amino Acid:
ISWEQADPFASLRKVGQDST
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.1
0.68
0.7
75.6
26.7
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
67.1
0.61
1.4
77.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016255
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016967
4229221 - 4236391
7171