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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4233783_4234107_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4233783 - 4234107
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GGCCCTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CTTGCCTGAAAA
Flanking Amino Acid:
YSSFFLYLRQVIGFSSETVA
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.2
76.2
39.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
72
0.49
0.9
64.3
36.7
Minor 5ss
34.2
-1.8
2.9
44.7
43.1
Minor BPS
58.6
0.27
1.7
69.51
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016255
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016967
4229221 - 4236391
7171