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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4234180_4234584_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4234180 - 4234584
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
VVGILSILAQTVVLGILMRS
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
82.1
0.72
0.8
73.4
36.1
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016255
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016967
4229221 - 4236391
7171