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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4261266_4261588_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4261266 - 4261588
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTGTATTCACT
Flanking Amino Acid:
LDDDDGGSAPLKSNATNHKD
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
83.9
0.76
0.7
76
32.6
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
53.2
0.18
2.1
80.31
41.8

Associated Gene:

Gene:
BSG
Ensembl Gene ID:
ENSAPLG00000011010
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011479
4253830 - 4263119
9290