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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4266621_4267433_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4266621 - 4267433
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCGGCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCGGGCTGACTG
Flanking Amino Acid:
NCWVSINGMVNDSWSELYSF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
65.7
0.35
1
57.4
38.6
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
36
-1.2
2
30.61
42.2

Associated Gene:

Gene:
HCN2
Ensembl Gene ID:
ENSAPLG00000018891
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025624
4266397 - 4271049
4653