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Intron Name: Anas_platyrhynchos_platyrhynchos_29_4268078_4268340_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4268078 - 4268340

Intron Length:

263

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGTCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCCCAC

U12 Branch Point Sequence:

ACCTCCCCACCT

Flanking Amino Acid:

LGELNEPLREEIVNFNCRKL

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.2

36.3

Major BPS

49.9

-0

1.3

60.3

37.5

Major PPT

82.7

0.74

0.7

77.1

24.9

Minor 5ss

44.1

-0.6

59.5

45.4

Minor BPS

45.2

-0.2

2.1

63.11

46.7

Associated Gene:

Gene:

HCN2

Ensembl Gene ID:

ENSAPLG00000018891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025624

4266397 - 4271049

4653