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Intron Name: Anas_platyrhynchos_platyrhynchos_29_4268582_4268768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4268582 - 4268768

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTCC

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGCAC

U12 Branch Point Sequence:

ACCGTTGCACCT

Flanking Amino Acid:

MKLSDGSYFGEICLLTRGRR

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

71.9

34.5

Major BPS

1.5

63.1

44.5

Major PPT

76.2

0.59

0.7

68.3

31.9

Minor 5ss

39.7

-1.2

2.9

50.9

45.8

Minor BPS

34.6

-1

2.1

44.47

41.3

Associated Gene:

Gene:

HCN2

Ensembl Gene ID:

ENSAPLG00000018891

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025624

4266397 - 4271049

4653