About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4274874_4275593_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4274874 - 4275593
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
CCTGGTGTGACA
Flanking Amino Acid:
QPYYRVRSTVLNSNMQNLSV
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
89.8
0.89
0.6
85.3
22.1
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
40
-0.7
2.3
48.66
43.2

Associated Gene:

Gene:
POLRMT
Ensembl Gene ID:
ENSAPLG00000003051
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003126
4272224 - 4286117
13894