Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4276521_4277408_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4276521 - 4277408

Intron Length:

888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TGGTGCTGAGCC

Flanking Amino Acid:

QDVYSAVAQQVEEFRKKDAA

Intron Amino Acid Position:

988

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

69.5

42.7

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

73.8

0.54

0.8

36.4

Minor 5ss

-2.6

3.3

38.6

46.5

Minor BPS

46.9

-0.2

2.1

60.13

44.7

Associated Gene:

Gene:

POLRMT

Ensembl Gene ID:

ENSAPLG00000003051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003126

4272224 - 4286117

13894