Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4279474_4280018_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4279474 - 4280018

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

CTCCTCTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCGCAC

U12 Branch Point Sequence:

TGCCTCCTAGCA

Flanking Amino Acid:

ILDSADRPLTGRKWWMNTDE

Intron Amino Acid Position:

906

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

54.6

44.5

Major BPS

44.5

-0.3

1.3

48.8

38.1

Major PPT

79.6

0.67

0.7

71.9

32.6

Minor 5ss

26.1

-2.8

3.2

31.1

42.9

Minor BPS

46.5

-0.2

1.9

58.11

41.1

Associated Gene:

Gene:

POLRMT

Ensembl Gene ID:

ENSAPLG00000003051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003126

4272224 - 4286117

13894