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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4282035_4282362_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4282035 - 4282362
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCCTCCTGAAGT
Flanking Amino Acid:
DEEYVDIMMQILNTLSPQGE
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
80.8
0.69
0.7
79.3
26.2
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
54.8
0.23
1.9
68.08
48.5

Associated Gene:

Gene:
POLRMT
Ensembl Gene ID:
ENSAPLG00000003051
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003126
4272224 - 4286117
13894