About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4296852_4297821_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4296852 - 4297821
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAACGAAA
5'SS Class:
major
3'SS Sequence:
CTCCCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATTTTTTACAT
Flanking Amino Acid:
SSSSSSSSSPILLSARWTFP
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
68.6
38
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.6
0.62
0.8
71.7
32.7
Minor 5ss
38.8
-1.3
3.2
48.2
42.2
Minor BPS
59.7
0.38
1.7
77.65
38.8

Associated Gene:

Gene:
RNF126
Ensembl Gene ID:
ENSAPLG00000002542
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002591
4296814 - 4300729
3916