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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4327711_4330187_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4327711 - 4330187
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CGTTTCTCCCCA
Flanking Amino Acid:
LGLVTCHPCKESCEGVVCGP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
77.7
0.62
0.8
69.4
36.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
35.6
-1
3.5
55.34
43.9

Associated Gene:

Gene:
FSTL3
Ensembl Gene ID:
ENSAPLG00000029654
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047446
4325801 - 4330889
5089
ENSAPLT00000018813
4324720 - 4330889
6170