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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4330374_4330816_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4330374 - 4330816
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGTGTGTC
5'SS Class:
major
3'SS Sequence:
GCCCTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTCTCCTCATCC
Flanking Amino Acid:
PVCRPAPHKGGGICWLQQGK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
68.7
36.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.3
0.57
0.8
68.7
31.7
Minor 5ss
38.4
-1.3
3.3
52.3
45
Minor BPS
56.2
0.18
1.9
67.5
43.8

Associated Gene:

Gene:
FSTL3
Ensembl Gene ID:
ENSAPLG00000029654
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018813
4324720 - 4330889
6170
ENSAPLT00000047446
4325801 - 4330889
5089