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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4354569_4358144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4354569 - 4358144
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAG
U12 Branch Point Sequence:
TGCTCCTTGAGC
Flanking Amino Acid:
LCATLEPRAQGQQDPALCST
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
49
-0
1.6
48.7
45.1
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
64.5
0.44
1.7
70.44
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024410
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047509
4354509 - 4362226
7718