About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4355157_4358144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4355157 - 4358144
Intron Length:
2988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAG
U12 Branch Point Sequence:
TGCTCCTTGAGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
49
-0
1.6
48.7
45.1
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
64.5
0.44
1.7
70.44
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024410
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034450
4355111 - 4361273
6163