Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4360691_4360921_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4360691 - 4360921

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTTCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

CGGCTCTGAACC

Flanking Amino Acid:

RRRRTKEDGKYAGIEPVDKI

Intron Amino Acid Position:

735

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

34.7

Major BPS

69.8

0.49

37.5

Major PPT

86.1

0.81

0.7

79.7

32.2

Minor 5ss

31.2

-2.2

3.2

38.8

46.5

Minor BPS

52.1

0.04

1.5

57.12

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048170

4356343 - 4362226

5884

ENSAPLT00000047509

4354509 - 4362226

7718

ENSAPLT00000034450

4355111 - 4361273

6163