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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4365167_4367856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4365167 - 4367856
Intron Length:
2690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATCT
Flanking Amino Acid:
KNLEHSSSNKNGLKKKNRNA
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.4
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.2
0.75
0.7
81.5
30.2
Minor 5ss
39
-1.2
3.1
47.7
42.3
Minor BPS
73.9
0.83
1.5
88.38
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026848
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035594
4364331 - 4388100
23770
ENSAPLT00000027985
4364086 - 4389338
25253
ENSAPLT00000021746
4364086 - 4369878
5793