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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4369049_4369793_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4369049 - 4369793
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTCCACTTAATT
Flanking Amino Acid:
MNESVSAERCS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.4
0.73
0.9
76.6
37.2
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
69.6
0.69
1.5
82.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026848
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035594
4364331 - 4388100
23770
ENSAPLT00000027985
4364086 - 4389338
25253