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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_438443_439804_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
438443 - 439804
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGGCC
5'SS Class:
major
3'SS Sequence:
CACTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CATTTCTCACTC
Flanking Amino Acid:
EYVRQTWRLEGDALEQAIIS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
60.9
39.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.2
0.63
0.8
69
36.7
Minor 5ss
29.5
-2.4
3.6
42.4
44.6
Minor BPS
48.6
-0.1
1.8
58.88
40.7

Associated Gene:

Gene:
ZAP70
Ensembl Gene ID:
ENSAPLG00000002455
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002477
437986 - 448818
10833