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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_439966_440584_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
439966 - 440584
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCCTTCTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTACTTTCAATA
Flanking Amino Acid:
YSGAQPDGKFLLREKKENGS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
65.6
40.2
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
71.3
0.48
1
65.8
39.7
Minor 5ss
33.8
-1.8
3.4
50
46.2
Minor BPS
55.4
0.17
1.5
65.42
34.9

Associated Gene:

Gene:
ZAP70
Ensembl Gene ID:
ENSAPLG00000002455
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002477
437986 - 448818
10833