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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4407047_4407974_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4407047 - 4407974
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
FIMSSNSSSAANGNDSKKFK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
74.4
36.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
41.6
-0.9
3.1
56.3
47.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006450
4401883 - 4419218
17336
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000028118
4379899 - 4419218
39320