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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4411680_4412037_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4411680 - 4412037
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATTTAAAAACT
Flanking Amino Acid:
DPMSAQHAKLSLDGQNIYNA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
45.8
-0.2
2.1
68.02
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000032672
4407533 - 4419218
11686
ENSAPLT00000028118
4379899 - 4419218
39320
ENSAPLT00000006450
4401883 - 4419218
17336