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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4412213_4412806_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4412213 - 4412806
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
CTATGTATAATG
Flanking Amino Acid:
SLDQTMAAAFGAPGIISASP
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
77.5
0.62
0.9
69.5
41
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
46
-0.4
2
52.42
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028118
4379899 - 4419218
39320
ENSAPLT00000006450
4401883 - 4419218
17336
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000032672
4407533 - 4419218
11686