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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4414230_4416862_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4414230 - 4416862
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCCC
U12 Branch Point Sequence:
TGTTCTCTAAAG
Flanking Amino Acid:
VLLVSNLNPERVTPQCLFIL
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
30.7
-1.2
4.2
65.3
41.6
Major PPT
70.8
0.47
1
71.1
33.7
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
56.9
0.08
1.9
66.39
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000032672
4407533 - 4419218
11686
ENSAPLT00000028118
4379899 - 4419218
39320
ENSAPLT00000006450
4401883 - 4419218
17336