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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4416897_4417395_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4416897 - 4417395
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCCTCACTT
Flanking Amino Acid:
VTPQCLFILFGVYGDVQRVK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77
34.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.2
0.46
1
71.4
33.1
Minor 5ss
48.4
-0.1
2.5
67
44.2
Minor BPS
67.7
0.63
1.8
88.16
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028118
4379899 - 4419218
39320
ENSAPLT00000006450
4401883 - 4419218
17336
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000032672
4407533 - 4419218
11686