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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4418407_4418807_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4418407 - 4418807
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTGTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GTGACTTGAACT
Flanking Amino Acid:
GGMVKGFKFFQKDRKMALIQ
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
77
0.61
1
76.7
37.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
61.5
0.44
1.5
74.56
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006173
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028118
4379899 - 4419218
39320
ENSAPLT00000006450
4401883 - 4419218
17336
ENSAPLT00000036098
4384295 - 4419218
34924
ENSAPLT00000032672
4407533 - 4419218
11686