About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_443070_444273_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
443070 - 444273
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCCACTTTAACC
Flanking Amino Acid:
PVPPTHPSVSRHLGALNADG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
78.8
38.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
88.5
0.87
0.7
80.8
36.8
Minor 5ss
47.1
-0.3
2.8
62.8
42
Minor BPS
69.7
0.6
1.3
70.49
41.3

Associated Gene:

Gene:
ZAP70
Ensembl Gene ID:
ENSAPLG00000002455
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002477
437986 - 448818
10833