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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_445921_446198_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
445921 - 446198
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTACTG
Flanking Amino Acid:
GPLNKFLSSKKDEITVSNIV
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
70.4
0.46
0.8
61.4
34.7
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
49.7
-0.1
1.9
60.63
41.6

Associated Gene:

Gene:
ZAP70
Ensembl Gene ID:
ENSAPLG00000002455
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002477
437986 - 448818
10833