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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_446392_446708_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
446392 - 446708
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTCTCTCAAAT
Flanking Amino Acid:
ALGADDSYYKARTAGKWPLK
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.3
0.64
0.9
72.2
38
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
57.5
0.31
1.7
74.8
41.6

Associated Gene:

Gene:
ZAP70
Ensembl Gene ID:
ENSAPLG00000002455
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002477
437986 - 448818
10833