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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4482929_4483792_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4482929 - 4483792
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGCCG
5'SS Class:
major
3'SS Sequence:
TCTGTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CCCTCACTGATC
Flanking Amino Acid:
YINVWELQRKDQLQQKIICP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
48.8
47.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
74.3
0.55
0.9
65.1
41.2
Minor 5ss
35.2
-1.7
3.5
47.9
47.8
Minor BPS
44.7
-0.4
1.9
50.97
40.6

Associated Gene:

Gene:
WDR18
Ensembl Gene ID:
ENSAPLG00000006982
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007247
4482719 - 4491593
8875