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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4485768_4485900_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4485768 - 4485900
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGTG
5'SS Class:
major
3'SS Sequence:
CTCCCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TCGGCCGTACTG
Flanking Amino Acid:
DCLALVWNLYSVLQAEPSQI
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
67.8
43.5
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
74.2
0.54
0.7
68
25.7
Minor 5ss
38.4
-1.3
3.7
55
49.2
Minor BPS
42.1
-0.7
2.3
45.86
47.5

Associated Gene:

Gene:
WDR18
Ensembl Gene ID:
ENSAPLG00000006982
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007247
4482719 - 4491593
8875