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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4499673_4499781_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4499673 - 4499781
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGCG
5'SS Class:
major
3'SS Sequence:
TGCCTCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GGGTACTGACGC
Flanking Amino Acid:
EELSGIHDPKLHHPSQGFRF
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.5
39.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78.5
0.64
0.8
69.3
36.9
Minor 5ss
23.9
-3
3.3
29.6
43.4
Minor BPS
40.3
-0.7
2
45.79
42.3

Associated Gene:

Gene:
GRIN3B
Ensembl Gene ID:
ENSAPLG00000007256
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007527
4496594 - 4500529
3936