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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4499928_4500054_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4499928 - 4500054
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
CGCATTGGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCGCAT
U12 Branch Point Sequence:
CGTCCCTGAGCT
Flanking Amino Acid:
PTTPAGVTMLKTEPPKLNAF
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.2
34.3
Major BPS
48
-0.1
1.4
56.9
40.5
Major PPT
58.7
0.2
1.1
52.5
41.4
Minor 5ss
30
-2.3
3.7
40.9
40
Minor BPS
53.8
0.2
1.8
71.65
44.5

Associated Gene:

Gene:
GRIN3B
Ensembl Gene ID:
ENSAPLG00000007256
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007527
4496594 - 4500529
3936