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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4505032_4505440_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4505032 - 4505440
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
ATTGATGTATCC
Flanking Amino Acid:
HTNTSKRHWLRFFYLYHFAF
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
80.6
0.69
0.9
76.1
32.4
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
41.9
-0.6
2.3
57.02
42

Associated Gene:

Gene:
TMEM259
Ensembl Gene ID:
ENSAPLG00000007277
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007568
4502675 - 4511699
9025