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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4507553_4507888_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4507553 - 4507888
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
KALAENEENKGFLRNVVSGE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
TMEM259
Ensembl Gene ID:
ENSAPLG00000007277
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007568
4502675 - 4511699
9025