Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4544980_4545842_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4544980 - 4545842

Intron Length:

863

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCCCA

5'SS Class:

major

3'SS Sequence:

CCCCCACGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

TCTCCCCCACGT

Flanking Amino Acid:

AAGTLISKVKGFHYESNNET

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

58.5

42.3

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

63.4

0.3

0.9

53.5

35.6

Minor 5ss

32.3

-2

2.9

31.7

42.2

Minor BPS

41.3

-0.5

2.2

62.27

47.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008725

4540797 - 4558272

17476