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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4547537_4547985_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4547537 - 4547985
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTTTTCACT
Flanking Amino Acid:
IGYLEKRTTLEMEFAKGLQK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
51.3
46.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
24.3
-3
3
21.2
37.4
Minor BPS
58.4
0.34
1.7
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476