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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4548051_4548170_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4548051 - 4548170
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TTCTCCTTTCTC
Flanking Amino Acid:
NSCKQTITQETSMPFLSIYL
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
84.9
0.79
0.7
83.7
24.4
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
44.5
-0.4
3.6
70.11
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476