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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4549426_4549602_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4549426 - 4549602
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCTCTCCCATCT
Flanking Amino Acid:
RRLEEEAKNKAEEAMATYRT
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.5
0.53
0.8
64.6
36.1
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
42.1
-0.5
2
58.98
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476