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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4550091_4550194_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4550091 - 4550194
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
TCCCACCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAC
U12 Branch Point Sequence:
TTCCTCCCACCC
Flanking Amino Acid:
DFEPYVSHNAWSPFIRSRKG
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.3
48.1
Major BPS
49.7
-0
1.4
52.4
43.3
Major PPT
64
0.32
0.9
55.4
34.7
Minor 5ss
37.5
-1.4
3.1
45
45
Minor BPS
42.9
-0.5
2
56.28
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476