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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4550837_4551227_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4550837 - 4551227
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GTCTCACTGAGG
Flanking Amino Acid:
ETDSSLDSNTGEFSHKLQRL
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
71.6
40.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
34.2
-1.8
2.9
34.5
41.3
Minor BPS
42.3
-0.7
2.2
49.39
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476