Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4553092_4554147_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4553092 - 4554147

Intron Length:

1056

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

CGTGTCCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

AGGCTCTCACGC

Flanking Amino Acid:

SNVLKLYLRQLPEPIMPFRM

Intron Amino Acid Position:

844

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

72.7

0.56

30.1

Major PPT

76.7

0.6

0.9

69.4

36.8

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

39.6

-0.8

1.9

42.62

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008725

4540797 - 4558272

17476